David Langenberger

Langenberger D*, Pundhir S*, Ekstrom CT, Stadler PF, Hoffmann S, Gorodkin J: "deepBlockAlign: A tool for aligning RNA-seq profiles of read block patterns", Bioinformatics, 1;28(1):17-24.
(2012) * authors contributed equally

‣Langenberger D, Bartschat S, Hertel J, Hoffmann S, Tafer H, and Stadler PF: "Microrna or not microrna?“, BSB 2011, Lecture Notes in Computer Science. Springer, pp. 1-9.
(2011)

‣Fasold M*, Langenberger D*, Binder H, Stadler PF, Hoffmann S: "DARIO: A ncRNA detection and analysis tool for next-generation sequencing experiments", Nucleic Acids Res. (Web Server Issue), 1-6.
(2011)  * authors contributed equally

‣Findeiß S, Langenberger D, Stadler PF, Hoffmann S: "Traces of Post-Transcriptional RNA Modifications in Deep Sequencing Data", Biol Chem. 392(4):305-313.
(2011)

‣Dalloul RA, Long JA, Zimin AV, Aslam L, Beal K, Blomberg L, Burt DW, Crasta O, Crooijmans RPMA, Cooper K, Coulombe RA, De S, Delany ME, Dodgson JB, Dong JJ, Evans C, Flicek P, Florea L, Folkerts O, Groenen MAM, Harkins TT, Herrero J, Hoffmann S, Megens HJ, Jiang A, de Jong P, Kaiser P, Kim H, Kim KW, Kim A, Langenberger D, Lee MK, Lee T, Mane S, Marcais S, Marz M, McElroy AP, Modise T, Nefedov M, Notredame C, Paton IR, Payne WS, Pertea G, Prickett D, Puiu D, Qioa D, Raineri E, Salzberg SL, Schatz MC, Scheuring C, Schmidt CJ, Schroeder S, Smith EJ, Smith J, Sonstegard TS, Stadler PF, Tafer H, Tu Z, Van Tassell CP, Vilella AJ, Williams K, Yorke JA, Zhang L, Zhang H, Zhang X, Zhang Y, and Reed KM: "Multi-platform next generation sequencing of the domestic turkey (Meleagris gallopavo): Genome assembly and analysis.", PLoS Biology. 8,9: e1000475.
(2010)

‣Sturm M, Hackenberg M, Langenberger D, Frishman D: "TargetSpy: a supervised machine learning approach for microRNA target prediction", BMC Bioinformatics. 11(1):292. 
(2010)  

‣Langenberger D, Bermudez-Santana C, Stadler PF, Hoffmann S: "Identification and Classification of Small RNAs in Transcriptome Sequence Data", Pac Symp Biocomput. 2010:80-7.
(2010)

‣Langenberger D, Bermudez-Santana C, Hertel J, Hoffmann S, Khaitovitch P, Stadler PF: "Evidence for Human microRNA-Offset RNAs in Small RNA Sequencing Data", Bioinformatics 25(18):2298-230.
(2009)

‣Hackenberg M, Sturm M, Falcon J, Langenberger D, Aransay A: "miRanalyzer: A microRNA detection and analysis tool for next-generation sequencing experiments", Nucleic Acids Res. 37(Web Server issue):W68-76.
(2009)

‣Gruen D, Wang YL, Langenberger D, Gunsalus KC, Rajewsky N: "microRNA Target predictions across seven Drosophial species and comparison to mammalian targets", PLoS Comp. Biol. 1:e13.
(2005)