Saim Momin

1. Development of Bioconda package distribution for bioinformatic tools and algorithms. 2. Benchmarking of preexisting and in-development Snakemake pipelines for performance and results comparison.

1. Development of Sequencing based NGS pipelines for Bacterial Characterization consisting of several modules such as SNP Detection, Antimicrobial Resistance Genes Detection, Serotyping, Straintyping, Bacterial Virulence Gene Detection, Plasmid Detection) 2. Routine bioinformatic analysis according to project requirements. 3. Development and integration of API’s for custom Bio-IT Project. 4. Support team with troubleshooting and assistance related to development items.

National finalist for Smart India Hackathon 2020, for the problem statement issued Ministry of Micro, Small and Medium Enterprises. 1. Developed an image classifier model for detection of single use plastics with Neural Networks Architecture. (Keras, Tensorflow) 2. Integrated and hosted the model with a B2B website as PaaS framework. 3. Responsible for developing a business model for collection and utilisation of single use plastics and various other industrial wastes.

1. Development of a sequencing based pathogen monitoring pipeline for routine bioinformatics analysis. 2. Integration of the pipeline with Interactive RShiny Dashboard for real time statistics from NCBI database.

1. Performed comparative studies and estimated toxicity endpoints from EPA database. 2. Collection of toxicity endpoints for predictive modelling. 3. Responsible for leading a team of 4 members for project management and in-time solution delivery. 4. Providing support and feedback to team on their respective queries and blockades.

1. Development of analytics dashboards for custom projects. 2. Implemented a machine learning based solution for an industrial client. 3. Developed and maintained Software Design Documentation for projects. 4. Contributed towards hosting of software solutions using AWS Cloud.

1. Responsible for evaluation of Project MANAV - A Human Atlas initiative by Department of Biotechnology (DBT), India 2. Performed testing and evaluation of annotation service for accurate and scientific information retrieval.

1. Introduction to various Next Generation Sequencing data analysis methodologies, tools and frameworks. 2. Performed RNA-Seq Differential Gene Expression Profiling for Bos Taurus genome. 3. Implemented R and Python packages to analyse and interpret the results obtained from RNA-Seq.