Basic

Dr. Chantal Roth

Employee, Senior Staff Engineer, Software/Principal Bioinformatic Scientist, Thermo Fisher Scientific

Bern, Switzerland

Skills

Object Oriented Programming
Software Development
Software Engineering
Java
algorithms development
VAADIN
J2SE
JDBC
Java 3D
Java2D
data integration
XML
O/R mapping
UML
design patterns
bioinformatics
refactoring
Clients
Interface Design
Visualization
web applications
Swing
Ontology
Knowledge management
MongoDB
Python
MySQL
PostgreSQL
Amazon AWS
Amazon S3
JavaFX
JavaScript
jQuery
d3.js
OOA
OOD
Java Swing
Agile Software Development
HTML5
ORM
GWT
NetBeans
Eclipse Java IDE
Android SDK
Genomics
Next Generation Sequencing
SCRUM
DNA Sequencing
Biotechnology

Timeline

Professional experience for Chantal Roth

  • Current 13 years and 5 months, since Feb 2008

    Senior Staff Engineer, Software/Principal Bioinformatic Scientist

    Thermo Fisher Scientific

    • Development of forensics DNA profile search algorithm • Development of mtDNA variant caller, custom mtDNA specific Smith-Waterman algorithm (forensics) • Development of multi sample data visualization heat map plugins for Ion Reporter • Development of open Source applications to visualize raw data generated by the Ion Torrent PGM. • Development of probabilistic models and algorithms for a single molecule DNA sequencing platform

  • 2003 - 2008

    Sr. Software Engineer/Associate Director

    Verenium/Diversa/BASF

    • Management of software engineering group of 8-10 people • Design and development of IRobot, a robot schedule optimization application • Design and development of Symphony, a general workflow application framework that is able to support any kind of workflow and process based on ontologies • Continued and lead development of bioinformatics platform BioSphere for Syngenta, including viewers and editors for metabolic pathways, expression data and search tools

  • 2000 - 2003

    Sr. Bioinformatics Scientist

    Novartis/Syngenta

    • Project lead, design and implementation of BioSphere, a globally deployed bioinformatics platform to visualize and integrate various sequence related data • Designed and developed Saphire, a general reusable full stack architecture including persistence framework, graphics framework and application framework (like Spring) • Development of a generic data/XML loader for various db systems • Designed and implemented a template based code generator (and O/R mapping tool)

Educational background for Chantal Roth

  • 1996 - 2000

    Informatik (Wissenschaftliches Rechnen)

    ETH Zuerich

    Computational Biology

  • 1990 - 1995

    Biochemie

    ETH Zurich

    Molekularbiologie, Genetik

Languages

  • English

    First language

  • German

    First language

  • French

    Basic

Interests

physics
Artificial intelligence
Karate
science in general
Machine learning

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