Tatiana Mamontova

Responsibilities: •Created drivers to set up device-LIS communication in the lab. •Programmed various laboratory Evoware protocols for Tecan EVO stations. •Launched the use of the git repository by colleagues (to preserve drivers and Evoware scripts for the future). •Led the project of analyzing technical characteristics of new devices prior to their release on the market (also communicated with foreign partners) Stack: python (requests, bs4, wxpython, psycopg2, pandas), Postgres SQL, Git, Trello, Evoware

•Participated in creation of infrastructure for primary data collection and storage. •Developed the data parser and basic pipeline for quantification, analysis and visualization of protein concentration data. •Took part in annotation of scientific articles and open datasets for data analysis. •Mentored a couple of interns. Stack: python (pandas, numpy, scipy, sklearn, matplotlib, seaborn), Jupyter Notebook,Postgres SQL, Benchling, Bitbucket, Confluence, Google Docs, clinical proteomics

I have analyzed game mechanics and metrics: -ABC / XYZ analysis of in-game items and described the game through AERM matrix (helped to get a hold of monetization) -Made QA & community managment data-driven -Made dashbords for the team in redash (on Clickhouse) -A/B testing of mechanics and UI features. -Wrote technical specifications for dev. and design teams Stack: python (pandas, sci-py, numpy, matplotlib, seaborn, a bit of scikit-learn), Jupyter, MySQL, Clickhouse, redash, Jira, Confluence, Trello

•Analyzed of university-level natural science textbooks (mostly biochemistry-related) •Created tasks from scratch and refined old tasks according to technical specifications (for the EDU platform for the aforementioned textbooks) •Adapted existing tasks for the EDU platform (making tasks interactive, adding alt-texts, checking for typos…) Stack: Google documents, private EDU platform, Trello

•Took part in experiments for the grant in the field of LFQ plant proteomics •Automated analysis of proteomics data with specialized software and python scripts: statistics, protein annotation from open-source DB, protein clustering •Made a workshop for master students on the analysis of shotgun-protein sequencing data •Participated in LifeCode 2017 bioinformatics hackathon Stack: python (pandas, sci-py, numpy, biopython), Xcalibur, LCQuant, Proteome Discoverer, Progenesis, MaxQuant-Perseus, LC-MS/MS

•Conducted several experiments for master thesis and the grant project in the field of shotgun proteomics, posttranslational modifications (PTM) analysis •Conducted chemoinformatic calculations to investigate the process of PTM creation Stack: python (pandas numpy, sci-py), YASARA, MOE, MOPAC 2016, LC, LC-MS/MS Presentation from the defense of the thesis: https://yadi.sk/i/1ymoxmtuWCv-yg

General physiology dept. •Prepared equipment and reagents for laboratory workshops •Created a detailed inventory of available equipment and reagents Stack: MS Office

•Maintained the tissue and DNA bank of the Center for Radiation Medicine •Reorganized the structure of the DNA bank: created a database in MS Access, modified the sample storage protocol •Made literature reviews required at the preliminary stage of the studies, conducted in the group •Did sample preparation for NGS (IonTorrent) Stack: MS Office, molecular biology lab work