Dr. Markus Joppich
Fähigkeiten und Kenntnisse
Werdegang
Berufserfahrung von Markus Joppich
- Current 1 year, since Jul 2025
Parental Leave
Parental Leave
Parental Leave and Transition to Rhine-Main Metropolitan Area
- 3 years and 8 months, Nov 2021 - Jun 2025
Data Scientist|Architect (Bioinformatics) / Postdoctoral Researcher
LMU-München
- Built large-scale biomedical knowledge graph for ML target discovery - Developed graph ML (VAE) and RAG systems for LLM applications - Created scalable pipelines for multi-omics and clinical data to generate insight - Led single-cell atlas (3.3M+ cells, 20+ diseases) - Built fuzzy (FlowSets) and ML (RF/XGBoost) models for decision making - FAIR data and workflow principles (Docker, CI/CD(CircleCI)) - Mentored researchers; taught data science & bioinformatics - Collaborated in agile, cross-functional teams
- 6 years and 9 months, Mar 2015 - Nov 2021
Data Scientist|Engineer (Bioinformatics) / Doctoral Researcher
LMU München
- Built NLP/text mining pipelines (Python) for 30M+ abstracts, 3M+ full texts - Developed NER & relation extraction (ontologies, rules), +7pp F1 - Engineered scalable workflows (PySpark, SQL, distributed systems) - Designed graph/relational data architectures for large-scale querying - Developed Python/R tools for single-cell, sequencing & spatial analysis - Taught and supervised student research projects
Ausbildung von Markus Joppich
- 6 years and 9 months, Mar 2015 - Nov 2021
Bioinformatik
LMU Munich
PhD Candidate in Bioinformatics; Integrative Methods for complex human diseases; Text Mining miRNA-Gene interactions; (sc)RNA-seq analysis pipeline; Spatial Proteomics
- 2 years and 4 months, Oct 2012 - Jan 2015
Informatik
RWTH Aachen University
- 5 years, Oct 2009 - Sep 2014
Informatik
RWTH Aachen
Sprachen
German
C2 (Verhandlungssicher / Muttersprachlich)
English
C1 (Fließend)
French
A1-A2 (Grundkenntnisse)
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