Prof. Dr. Stefan Janssen

Beamtet, Professor, Justus Liebig University Giessen
Gießen, Germany

Fähigkeiten und Kenntnisse

Microbial Ecology
Algebraic Dynamic Programming
Big Data
Functional Programming
Software Development
Functional Annotation
RNA secondary structure prediction
Projectmanagement
Metagenomic Profiling
Machine Learning
Multi-Omics
Python
Perl
Java
Haskell
Bellman's GAP
R
C/C++
LaTeX
Bash
PHP
Makefile
gnuplot
HTML
CSS
XML
Solaris
Ubuntu
CentOS
Mint
Mac OS X
Torque
Slurm
Windows
Git
Travis
Mercurial
QIIME
QIITA
PICRUSt
ANCOM
Deblur
scikit-bio
scikit-learn
Pandas
Infernal
HMMer
Vienna RNA Package
Bielefeld RNA Studio
Stochastic Context Free Grammars
Prototype Selection
non coding RNA
Homology Search
NGS analyses
Assembly
Binning
Multiomics
Phylogenetics
Bioinformatik
Forschung
Molekularbiologie
Datenanalyse
Simulation
American Gut Project
Earth Microbiome Project

Werdegang

Berufserfahrung von Stefan Janssen

  • Current 6 years and 10 months, since Aug 2019

    Professor

    Justus Liebig University Giessen

    Algorithm Design in Bioinformatics, especially in microbiome research.

  • 1 year and 3 months, May 2018 - Jul 2019

    PostDoc

    Universitätsklinikum Düsseldorf
  • 2 years and 1 month, Apr 2016 - Apr 2018

    Post-Doctoral Research Associate with Rob Knight

    University of California, San Diego

  • 11 months, Apr 2015 - Feb 2016

    Postdoctoral Research Fellow

    Deutsches Zentrum für Infektionsforschung DZIF

    Critical Assessment of Metagenome Interpretation

  • 6 years and 5 months, Nov 2008 - Mar 2015

    PhD Student

    Universität Bielefeld

    Research: -RNA secondary structure prediction -Homology search -Algebraic dynamic programming -non coding, functional RNA Teaching: -Programming in Haskell -Advanced Dynamic Programming -Algorithms and Data Structures -Algorithms in Bioinformatics -Detecting Regulatory Motifs -Network Programming and Grid Computing Course -Parallel Algorithms and Architectures -Perl Programming Course -Sequence Analysis with Distributed Resources

  • 7 years and 9 months, Apr 2005 - Dec 2012

    Werkstudent

    Bielefeld University

    Website administration for the Chair of Molecular Cell Physiology, Prof. Dr. Dorothee Staiger, Bielefeld University

  • 7 months, Sep 2009 - Mar 2010

    Projektleitung

    SCY-TEC GbR

    Head of a junior consultant team: Implementation of an online database about gene regulation in cancer tissues.

  • 1 year and 1 month, Jun 2008 - Jun 2009

    Junior Consultant

    Wilhelm Böllhoff GmbH & Co KG

    Junior consultant project: Software design for activity managing.

  • 1 year, Apr 2006 - Mar 2007

    Tutor

    Universität Bielefeld

    Student instructor for: - Introduction to Perl - Advanced Algorithms on Sequences - Techniques for Software Development

Ausbildung von Stefan Janssen

  • 6 years and 5 months, Nov 2008 - Mar 2015

    RNA Informatics

    Bielefeld University

    Kisses, ambivalent models and more: Contributions to the analysis of RNA secondary structure.

  • 2 years and 1 month, Oct 2006 - Oct 2008

    Bioinformatics and Genome Research

    Bielefeld University

    Faster computation of exact RNA shape probabilities

  • 3 years, Oct 2003 - Sep 2006

    Bioinformatics and Genome Research

    Bielefeld University

    Shape based indexing for faster search of RNA family databases

Sprachen

  • English

    C1 (Fließend)

  • German

    C2 (Verhandlungssicher / Muttersprachlich)

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