sakina bombaywala

My work involves: • Developing easy-to-implement and offline usable bioinformatic pipelines for real-time analysis of long- and short- read NGS data • Variant identification and phylogenetic analysis of bacterial and viral genome sequences in clinical and environmental settings • Maintaining analysis workflows for targeted metagenomic and metatranscriptomic analysis • Collaborating with interdisciplinary team of doctors, physicians and lab technicians • Writing publications, project reports, technical SOPs

Developing easy-to-implement and offline usable bioinformatic pipelines for real-time analysis of long- and short- read NGS data. Variant identification and phylogenetic analysis of bacterial and viral genome sequences in clinical and environmental settings. Maintaining analysis workflows for targeted metagenomic and metatranscriptomic analysis. Collaborating with interdisciplinary team of physicians and lab technicians. Writing publications, project reports, technical SOPs and EU grant proposals. Providing

• Generalized and targeted NGS analysis for antibiotic resistance profiling • Using ML for prediction of antibiotic resistance and fixation in wastewater microbiomes • Bioinformatic support in research groups for sequence data processsing and visualization • Scientific publications writing that upholds credibility and quality

Protein structure modeling and function prediction. Using bioinformatics tools for detection of novel catabolic gene clusters. In silico enzyme-substrate kinetic study for bioremediation.